I -input-size genozip configures its internal data structures to optimize execution speed based on the file size. or myfile.bam, the MD5 calculated is that of the original, uncompressed textual file - myfile.vcf or myfile.sam respectively. m - md5 Calculate the MD5 digest of the original textual file (vcf, sam.) instead of Adler32. Password-protected - encrypted with 256-bit AES Compressing with this option also consumes less memory. Files compressed with this option also uncompress faster. F -fast Fast compression, but lower compression ratio than -best. This is the default mode of genozip - this flag has no additional effect. best Best compression, but slower than -fast mode. genozip takes advantage of similarities between the input files so that the bound file is usually smaller than the combined size of individually compressed files To bind files, they must be of the same type (VCF, SAM etc) and if theyĪre VCF files, they must contain the same samples. The files can be later unbound with 'genounzip -unbind'. This option can also be used to bind multiple input files into a single genozip file. This flag should be used when redirecting input data with a.
#BAM FILE FORMAT DECOMPRESSION FULL#
See "genozip -help=input" for full list of accepted file types
![bam file format decompression bam file format decompression](https://tipsmake.com/data2/images/link-download-winrar-600b1-a-free-compression-and-decompression-tool-picture-1-ZMXmOrqJa.jpg)
data-type is one of the supported input file types listed above, examples: bam vcf.gz fq.xz.
#BAM FILE FORMAT DECOMPRESSION LICENSE#
L -license Show the license terms and conditions for this product Input - list of possible arguments of -input
![bam file format decompression bam file format decompression](https://brentp.github.io/img/cram_exclude.png)
d -decompress Same as running genounzip. Genozip sample.R1.fq.gz sample.R2.fq.gz -pair -reference -o sample.genozip genozip -optimize -password 12345 Īctions - use at most one of these actions: xz files requires bcftools, samtools or xz, respectively, to be installed, as does using -index Supported input file types, as recognized by their listed filename extension(s):įASTA: fasta, fa, faa, ffn, fnn, fna (possibly.
![bam file format decompression bam file format decompression](https://www.researchgate.net/profile/Morteza-Hosseini-6/publication/309134977/figure/fig8/AS:837126769885192@1576597983473/Compression-results-of-genomic-sequence-data-for-BAM-file-format.png)
One or more file names or URLs may be given, or if omitted, standard input is used instead VCF/BCF, SAM/BAM/CRAM, FASTQ, FASTA, GVF and 23andMe
![bam file format decompression bam file format decompression](https://cdn-ak.f.st-hatena.com/images/fotolife/k/kazumaxneo/20210218/20210218233123.png)
Genozip can compress any file, but is optimally designed to compress the following file types: